PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK40614.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family WRKY
Protein Properties Length: 568aa    MW: 62106.7 Da    PI: 6.2445
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK40614.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY96.91.3e-30320378259
                 --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
        WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                 +Dg++WrKYGqK+ kg+++pr+YYrCt+a  Cpv+k+v+r+aed +++++tYeg+Hnh+
  KFK40614.1 320 SDGCQWRKYGQKMAKGNPCPRAYYRCTMAtACPVRKQVQRCAEDRSILITTYEGNHNHP 378
                 7***************************99****************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.8E-33304380IPR003657WRKY domain
SuperFamilySSF1182901.7E-27312380IPR003657WRKY domain
PROSITE profilePS5081128.988314380IPR003657WRKY domain
SMARTSM007742.8E-36319379IPR003657WRKY domain
PfamPF031061.7E-26321378IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0016036Biological Processcellular response to phosphate starvation
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0080169Biological Processcellular response to boron-containing substance deprivation
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 568 aa     Download sequence    Send to blast
MDRGWSGLTL DSSSLDLINP NRLNHSNHGR FFSNPLTMSR NVDDDEKTKV STGFRFPVSL  60
SGIRDREDDD LSSEVAGDND REVPGEVDFF SDKKSRVCHV DVDETRVKKE EHDDRTDVNT  120
GLNLRTTGNT RSDESMIDDG VSSEIEDKRA KNELAQLQDE LKKMTMENQQ LKELLTQVSN  180
NYTSLQMHLV SLMQQQQQQH QNNIHHNKAI EAVEKPEETI VPRQFIDLGP LRAVGEGEEV  240
SNSSSEDRTR SGGSSAAERR SNEVRDGKRV GREESPETES NKVQKVNNTS SPATFEQSAE  300
ATMRKARVSV RARSEAPMIS DGCQWRKYGQ KMAKGNPCPR AYYRCTMATA CPVRKQVQRC  360
AEDRSILITT YEGNHNHPLP PAAVAMASTT TAAANMLLSG SMSSHDGMMN PTNLLARAVL  420
PCSTSMATIS ASAPFPTVTL DLTHSPPPPN GPNPSSSAAA ASNNNNQNHN SLMQRSQLPQ  480
QQQQMTNLPP GMLPQVIGQA LYNQSKFSGL QFSGGSPSVA AFSQPHTVAD TITALTADPN  540
FTAALAAVIS SMINGSNQHN GEGNNKNQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A1e-21306382176WRKY transcription factor 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00209DAPTransfer from AT1G62300Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002886480.10.0WRKY DNA-binding protein 6
SwissprotQ9C5190.0WRKY6_ARATH; WRKY transcription factor 6
TrEMBLA0A087HER20.0A0A087HER2_ARAAL; Uncharacterized protein
STRINGfgenesh2_kg.2__246__AT1G62300.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM105728107
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G62300.10.0WRKY family protein